PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EcS549707.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Myrtales; Myrtaceae; Myrtoideae; Eucalypteae; Eucalyptus
Family B3
Protein Properties Length: 123aa    MW: 13858.8 Da    PI: 9.1593
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EcS549707.20genomeECGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-151296188
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
            B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88
                  f+ v+ p +v k+  l++p + a++h+    ++++++l+     +W  +++ ++++++  l++GWk+F  +n+L++ D++vF l ++ s
  EcS549707.20 12 FLVVMRPTHVYKRFYLSIPTDWATTHMDR--RNQDVILRV-GEGTWHARYRLTGRGSG-GLSSGWKNFTLENNLEQSDVCVFNLADSiS 96
                  788999********************877..555788877.5569*****88554444.59**********************987643 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-209107IPR015300DNA-binding pseudobarrel domain
CDDcd100178.44E-1311107No hitNo description
SuperFamilySSF1019361.0E-1711107IPR015300DNA-binding pseudobarrel domain
PfamPF023625.4E-131296IPR003340B3 DNA binding domain
PROSITE profilePS5086312.53412109IPR003340B3 DNA binding domain
SMARTSM010191.2E-912109IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0005506Molecular Functioniron ion binding
GO:0016705Molecular Functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
GO:0020037Molecular Functionheme binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
KLARAAASSD SFLVVMRPTH VYKRFYLSIP TDWATTHMDR RNQDVILRVG EGTWHARYRL  60
TGRGSGGLSS GWKNFTLENN LEQSDVCVFN LADSISKNII LDVTIFRVVE DIVPPTLVNS  120
FSV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-151211249146B3 domain-containing transcription factor VRN
4i1k_B2e-151211249146B3 domain-containing transcription factor VRN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010059782.18e-85PREDICTED: B3 domain-containing protein REM16-like isoform X1
RefseqXP_010059783.17e-85PREDICTED: B3 domain-containing protein REM16-like isoform X2
RefseqXP_010059786.16e-85PREDICTED: B3 domain-containing protein REM16-like isoform X4
TrEMBLA0A059BJJ97e-85A0A059BJJ9_EUCGR; Uncharacterized protein
TrEMBLA0A059BJD07e-85A0A059BJD0_EUCGR; Uncharacterized protein
STRINGGLYMA14G08630.24e-34(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.16e-19B3 family protein